St. Jude Research
Update: May 2010
Since February 2006, researchers at St. Jude Children's Research Hospital have been able to collect 46 tumor samples from children with diffuse brainstem glioma (Tyler's was the first). This protocol had an initial duration of 4 years but a modification will be made to allow for collection and analysis of tumor samples for 4 more years.
The formal objectives of this study are:
1.1 Primary Objectives
- 1.1.1 To perform genome-wide analysis of DNA gains and losses, and RNA expression in tumor samples and normal tissue in patients with diffuse brainstem glioma
- - To identify regions of genomic gain or loss using either array comparative genomic hybridization (aCGH) or single nucleotide polymorphism (SNP) arrays
- - To investigate genome-wide expression patterns of RNA derived from tumor samples and normal tissue via Affymetrix gene expression-profiling
- 1.1.2 To validate the results of the genome-wide analysis by conducting further evaluation of candidate genes or by investigating the expression of relevant gene products at the RNA and protein levels
- - To perform analysis of mutations in candidate tumor-suppressor genes and oncogenes using direct sequence analysis of tumor DNA and to confirm the tumor-specific nature of these mutations by analyzing the correspondent constitutional DNA
- - To confirm genomic gains or losses identified via objective 220.127.116.11 by means of fluorescence in situ hybridization (FISH) performed on tissue microarray (TMA) using non-neoplastic brain tissue from each patient as control when available
- - To explore protein expression patterns identified by immunohistochemistry or western blot in this study, and to compare to normal brainstem tissue
The collaborative efforts of Tylerís Treehouse, Inc.
and St. Jude Childrenís Research Hospital has initiated
a unique research protocol entitled: The Comprehensive
Molecular Analysis of Tumor Samples Derived from Patients
with Brainstem Glioma. This unique study, led by Dr.
Alberto Broniscer, hopes to address the current lack
of knowledge for this terrible tumor. The ultimate
goal is to identify specific molecular targets for
A fund earmarked for brainstem glioma research, started
in response to Tylerís death and by Tylerís Treehouse,
Inc., has been established within the Division of
Neuro-Oncology at St. Jude. Thus far, over the past
several months, this money has been helpful in facilitating
the collection of other tissue samples. More specifically,
so that high-quality specimens are available for research,
this fund has helped subsidize non-local autopsies
of patients with brainstem gliomas and any procedures
required to get the tissue collected outside of Memphis
to St. Jude laboratories in the best possible condition.
for more information on this study.